PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 145aa    MW: 16599.7 Da    PI: 10.1622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-172170255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr+r++lg++ ++  Aa+a++ a   l+g
  XP_009793053.1 21 PYRGIRKRK-WGKWVAEIREP---NKRTRIWLGSYSSPVAAARAYDTAVFHLRG 70
                    69****999.**********9...337**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-202179IPR016177DNA-binding domain
SMARTSM003805.5E-352184IPR001471AP2/ERF domain
PROSITE profilePS5103222.552178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-302279IPR001471AP2/ERF domain
PRINTSPR003673.0E-122233IPR001471AP2/ERF domain
CDDcd000182.31E-272278No hitNo description
PfamPF008471.8E-102270IPR001471AP2/ERF domain
PRINTSPR003673.0E-126080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEGGSCCSRI EKRQNSQQEK PYRGIRKRKW GKWVAEIREP NKRTRIWLGS YSSPVAAARA  60
YDTAVFHLRG PSAKLNFPQF IVNNENHQLH NQLSASDIRK KATQVGAKVD ANLQTATNST  120
ESNWLSMRPD LNEYPTPETW EELAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-162085470ATERF1
3gcc_A6e-162085470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793053.11e-106PREDICTED: ethylene-responsive transcription factor RAP2-1-like
RefseqXP_016456981.11e-106PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC308e-47RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A068TYD88e-63A0A068TYD8_COFCA; Uncharacterized protein
STRINGSolyc04g078640.1.18e-60(Solanum lycopersicum)
STRINGPGSC0003DMT4000205257e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-48related to AP2 1